Kropotkin’s garden: facilitation in mangrove ecosystems (2019)
Book Chapter
Huxham, M., Berger, U., Skov, M. W., & Sousa, W. P. (2019). Kropotkin’s garden: facilitation in mangrove ecosystems. In S. J. Hawkins, K. Bohn, L. B. Firth, & G. A. Williams (Eds.), Interactions in the Marine Benthos: Global Patterns and Processes (431-447). Cambridge University Press. https://doi.org/10.1017/9781108235792.018

Despite the environmental stresses that mangrove forests experience – including fluctuating salinity, low soil oxygen and buffeting by waves – they can be highly productive. Facilitation, defined here as the benefits to an organism by the minimisatio... Read More about Kropotkin’s garden: facilitation in mangrove ecosystems.

Phenomics and Genomics Reveal Adaptation of Virgibacillus dokdonensis Strain 21D to Its Origin of Isolation, the Seawater-Brine Interface of the Mediterranean Sea Deep Hypersaline Anoxic Basin Discovery (2019)
Journal Article
Zeaiter, Z., Marasco, R., Booth, J. M., Prosdocimi, E. M., Mapelli, F., Callegari, M., Fusi, M., Michoud, G., Molinari, F., Daffonchio, D., Borin, S., & Crotti, E. (2019). Phenomics and Genomics Reveal Adaptation of Virgibacillus dokdonensis Strain 21D to Its Origin of Isolation, the Seawater-Brine Interface of the Mediterranean Sea Deep Hypersaline Anoxic Basin Discovery. Frontiers in Microbiology, 10, Article 1304. https://doi.org/10.3389/fmicb.2019.01304

The adaptation of sporeformers to extreme environmental conditions is frequently questioned due to their capacity to produce highly resistant endospores that are considered as resting contaminants, not representing populations adapted to the system.... Read More about Phenomics and Genomics Reveal Adaptation of Virgibacillus dokdonensis Strain 21D to Its Origin of Isolation, the Seawater-Brine Interface of the Mediterranean Sea Deep Hypersaline Anoxic Basin Discovery.

The role of fungi in heterogeneous sediment microbial networks (2019)
Journal Article
Booth, J., Fusi, M., Marasco, R., Michoud, G., Fodelianakis, S., Merlino, G., & Daffonchio, D. (2019). The role of fungi in heterogeneous sediment microbial networks. Scientific Reports, 9, Article 7537. https://doi.org/10.1038/s41598-019-43980-3

While prokaryote community diversity and function have been extensively studied in soils and sediments, the functional role of fungi, despite their huge diversity, is widely unexplored. several studies have, nonetheless, revealed the importance of fu... Read More about The role of fungi in heterogeneous sediment microbial networks.

Bacterial endophytes of mangrove propagules elicit early establishment of the natural host and promote growth of cereal crops under salt stress (2019)
Journal Article
Soldan, R., Mapelli, F., Crotti, E., Schnell, S., Daffonchio, D., Marasco, R., Fusi, M., Borin, S., & Cardinale, M. (2019). Bacterial endophytes of mangrove propagules elicit early establishment of the natural host and promote growth of cereal crops under salt stress. Microbiological Research, 223, 33-43. https://doi.org/10.1016/j.micres.2019.03.008

Mangroves, dominating tropical intertidal zones and estuaries, are among the most salt tolerant plants, and propagate through reproductive units called propagules. Similarly to other plants’ seeds, propagules may harbor beneficial bacteria. Our hypot... Read More about Bacterial endophytes of mangrove propagules elicit early establishment of the natural host and promote growth of cereal crops under salt stress.

High denitrification and anaerobic ammonium oxidation contributes to net nitrogen loss in a seagrass ecosystem in the central Red Sea (2018)
Journal Article
Garcias-Bonet, N., Fusi, M., Ali, M., Shaw, D. R., Saikaly, P. E., Daffonchio, D., & Duarte, C. M. (2018). High denitrification and anaerobic ammonium oxidation contributes to net nitrogen loss in a seagrass ecosystem in the central Red Sea. Biogeosciences, 15(23), 7333-7346. https://doi.org/10.5194/bg-15-7333-2018

Nitrogen loads in coastal areas have increased dramatically, with detrimental consequences for coastal ecosystems. Shallow sediments and seagrass meadows are hotspots for denitrification, favoring N loss. However, atmospheric dinitrogen (N2) fixation... Read More about High denitrification and anaerobic ammonium oxidation contributes to net nitrogen loss in a seagrass ecosystem in the central Red Sea.

Optimising camera trap data quality at mammal resting places. (2018)
Journal Article
Findlay, M. A., Briers, R. A., & White, P. J. C. (2018). Optimising camera trap data quality at mammal resting places. In Practice, 24-28

A thorough understanding of how camera traps function is essential for ensuring correct set-up and quality of data. We illustrate the challenges through a case study of camera trapping an otter Lutra lutra resting and breeding place. Appropriate surv... Read More about Optimising camera trap data quality at mammal resting places..

Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists (2018)
Journal Article
Lentendu, G., Mahé, F., Bass, D., Rueckert, S., Stoeck, T., & Dunthorn, M. (2018). Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists. Molecular Ecology, 27(13), 2846-2857. https://doi.org/10.1111/mec.14731

Tropical animals and plants are known to have high alpha diversity within forests, but low beta diversity between forests. By contrast, it is unknown if microbes inhabiting the same ecosystems exhibit similar biogeographic patterns. To evaluate the b... Read More about Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists.

Carbon in the coastal seascape: how interactions between mangrove forests, seagrass meadows and tidal marshes influence carbon storage (2018)
Journal Article
Huxham, M., Whitlock, D., Githaiga, M., & Dencer-Brown, A. (2018). Carbon in the coastal seascape: how interactions between mangrove forests, seagrass meadows and tidal marshes influence carbon storage. Current Forestry Reports, 4(2), 101-110. https://doi.org/10.1007/s40725-018-0077-4

Purpose of review: We use the ‘seascape’ concept to explore how interactions between mangrove forests, tidal marshes and seagrass influences the storage of carbon in these ecosystems. Mangrove forests, with the other two ‘blue carbon’ habitats, are e... Read More about Carbon in the coastal seascape: how interactions between mangrove forests, seagrass meadows and tidal marshes influence carbon storage.

Mangrove Ecosystem Services for Local Communities and their Vulnerability to Climate Change (2017)
Book Chapter
Huxham, M., Dencer-Brown, A., Diele, K., Kathiresan, K., Nagelkerken, I., & Wanjiru, C. (2017). Mangrove Ecosystem Services for Local Communities and their Vulnerability to Climate Change. In V. H. Rivera-Monroy, S. Y. Lee, E. Kristensen, & R. R. Twilley (Eds.), Mangrove ecosystems: a global biogeographic perspective on structure, function and services

The abundance of nitrogen cycle genes and potential greenhouse gas fluxes depends on land use type and little on soil aggregate size (2017)
Journal Article
Blaud, A., van der Zaan, B., Menon, M., Lair, G. J., Zhang, D., Huber, P., Schiefer, J., Blum, W. E., Kitzler, B., Wei, E. H., van Gaans, P., & Banwart, S. (2018). The abundance of nitrogen cycle genes and potential greenhouse gas fluxes depends on land use type and little on soil aggregate size. Applied Soil Ecology, 125, 1-11. https://doi.org/10.1016/j.apsoil.2017.11.026

Soil structure is known to influence microbial communities in soil and soil aggregates are the fundamental ecological unit of organisation that support soil functions. However, still little is known about the distribution of microbial communities and... Read More about The abundance of nitrogen cycle genes and potential greenhouse gas fluxes depends on land use type and little on soil aggregate size.

From shiny shoes to muddy reality: understanding how meso-state actors negotiate the implementation gap in participatory forest management (2017)
Journal Article
Kairu, A., Upton, C., Huxham, M., Kotut, K., Mbeche, R., & Kairo, J. (2018). From shiny shoes to muddy reality: understanding how meso-state actors negotiate the implementation gap in participatory forest management. Society and Natural Resources, 31(1), 74-88. https://doi.org/10.1080/08941920.2017.1382628

Recent research on participatory forest management (PFM) in the global south has highlighted the existence of a widespread “implementation gap” between the ambitious intent enshrined in legislation and the often partial, disappointing rollout of devo... Read More about From shiny shoes to muddy reality: understanding how meso-state actors negotiate the implementation gap in participatory forest management.

Biodiversity (2017)
Book Chapter
Lee, S. Y., Jones, E. B. G., Diele, K., Castellanos-Galindo, G. A., & Nordhaus, I. (2017). Biodiversity. In V. H. Rivera-Monroy, S. Y. Lee, E. Kristensen, & R. R. Twilley (Eds.), Mangrove Ecosystems: A Global Biogeographic Perspective (55-86). Springer. https://doi.org/10.1007/978-3-319-62206-4_3

With only about 80 species of true mangrove trees worldwide, mangrove ecosystems comprise a relatively low number of habitat-forming tree species, but a high diversity of decomposer, detritivorous and consumer species. Although the overall level of d... Read More about Biodiversity.

Mangroves and People: Local Ecosystem Services in a Changing Climate (2017)
Book Chapter
Huxham, M., Dencer-Brown, A., Diele, K., Kathiresan, K., Nagelkerken, I., & Wanjiru, C. (2017). Mangroves and People: Local Ecosystem Services in a Changing Climate. In V. H. Rivera-Monroy, S. Y. (. Lee, E. Kristensen, & R. Twilley (Eds.), Mangrove Ecosystems: A Global Biogeographic Perspective (245-274). Springer. https://doi.org/10.1007/978-3-319-62206-4_8

Mangrove forests provide many services, some of which are used mostly or exclusively by local people, often the relatively poor and marginalised. Here, such ‘local ecosystem services’ are defined as those benefitting people living zero to tens of kil... Read More about Mangroves and People: Local Ecosystem Services in a Changing Climate.

Pollinator importance networks illustrate the crucial value of bees in a highly speciose plant community (2017)
Journal Article
Ballantyne, G., Baldock, K. C. R., Rendell, L., & Willmer, P. (2017). Pollinator importance networks illustrate the crucial value of bees in a highly speciose plant community. Scientific Reports, 7(1), Article 8389. https://doi.org/10.1038/s41598-017-08798-x

Accurate predictions of pollination service delivery require a comprehensive understanding of the interactions between plants and flower visitors. To improve measurements of pollinator performance underlying such predictions, we surveyed visitation f... Read More about Pollinator importance networks illustrate the crucial value of bees in a highly speciose plant community.

Carbon storage in the seagrass meadows of Gazi Bay, Kenya (2017)
Journal Article
Githaiga, M. N., Kairo, J. G., Njoroge Githaiga, M., Gitundu, K., Gilpin, L., & Huxham, M. (2017). Carbon storage in the seagrass meadows of Gazi Bay, Kenya. PLOS ONE, 12(5), Article e0177001. https://doi.org/10.1371/journal.pone.0177001

Vegetated marine habitats are globally important carbon sinks, making a significant contribution towards mitigating climate change, and they provide a wide range of other ecosystem services. However, large gaps in knowledge remain, particularly for s... Read More about Carbon storage in the seagrass meadows of Gazi Bay, Kenya.

The Value and Opportunities of Community- and Citizen-based Approaches to Tropical Forest Biodiversity Monitoring (2017)
Book Chapter
Chandler, M., See, L., Andrianandrasana, H., Becker, D., Berardi, A., Bodmer, R., de Araujo Lima Constantino, P., Cousins, J., Crimmins, T. M., Danielsen, F., Brofeldt, S., Paula Giorgi, A., Huxham, M., Leslie, A., Mistry, J., Mora, B., Nelson, M., Poulsen, M. K., Pratihast, A., Theilade, I., …Williams, J. N. (2017). The Value and Opportunities of Community- and Citizen-based Approaches to Tropical Forest Biodiversity Monitoring. In M. Gill, R. Jongman, S. Luque, B. Mora, M. Paganini, & Z. Szantoi (Eds.), A Sourcebook of Methods and Procedures for Monitoring Essential Biodiversity Variables in Tropical Forests with Remote Sensing (223-281). GOFC-GOLD & GEO-BON

The biodiversity sourcebook is accessible in pdf format for free from:
•GOFC-GOLD Land Cover Office website: http://www.gofcgold.wur.nl/sites/gofcgold-geobon_biodiversitysourcebook.php
•GEO BON website:
http://geobon.org/

The value and opportunites of community-and citizen-based approaches to tropical forest biodiversity monitoring (2016)
Book Chapter
Chandler, M., See, L., Andrianandrasana, H., Becker, D., Berardi, A., Bodmer, R., de Araujo Lima Constantino, P., Cousins, J., Crimmins, T. M., Danielsen, F., Paula Giorgi, A., Huxham, M., Leslie, A., Mistry, J., Mora, B., Nelson, M., Poulsen, M. K., Kumar Pratihast, A., Theilade, I., Vakil, T., & Williams, J. N. (2016). The value and opportunites of community-and citizen-based approaches to tropical forest biodiversity monitoring. In M. Gill, R. Jongman, S. Luque, B. Mora, M. Paganini, & Z. Szantoi (Eds.), A Sourcebook of Methods and Procedures for Monitoring Essential Biodiversity Variables in Tropical Forests with Remote Sensing

Introduction - Earth Observation (EO) refers to the direct and indirect measurement of the Earth’s surface that can be undertaken using satellites, aircraft, on the ground and underwater using active and passive sensors (O’Connor et al., 2015). EO pr... Read More about The value and opportunites of community-and citizen-based approaches to tropical forest biodiversity monitoring.

Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition (2016)
Book Chapter
Blaud, A., Menon, M., van der Zaan, B., Lair, G., & Banwart, S. (2017). Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition. In D. Sparks, & S. Banwart (Eds.), Quantifying and Managing Soil Functions in Earth's Critical Zone - Combining Experimentation and Mathematical Modelling (119-142). Academic Press. https://doi.org/10.1016/bs.agron.2016.10.006

Soil aggregates are microhabitats for microorganisms, and directly influence microorganisms that live within and are influenced by microorganisms in return. Two methods are used to isolate soil aggregates by their size: dry sieving (sieving air-dried... Read More about Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition.

Evaluating, predicting and mapping belowground carbon stores in Kenyan mangroves (2016)
Journal Article
Gress, S. K., Huxham, M., Kairo, J. G., Mugi, L. M., & Briers, R. A. (2017). Evaluating, predicting and mapping belowground carbon stores in Kenyan mangroves. Global Change Biology, 23(1), 224-234. https://doi.org/10.1111/gcb.13438

Despite covering only approximately 138,000 km2, mangroves are globally important carbon sinks with carbon density values 3 to 4 times that of terrestrial forests. A key challenge in evaluating the carbon benefits from mangrove forest conservation is... Read More about Evaluating, predicting and mapping belowground carbon stores in Kenyan mangroves.

biotic: Calculation of Freshwater Biotic Indices. R package version 0.1.2 (2016)
Digital Artefact
Briers, R. (2016). biotic: Calculation of Freshwater Biotic Indices. R package version 0.1.2

The biotic package calculates a range of commonly used UK freshwater invertebrate biotic indices, based on family level identification. Indices that can be calculated are BMWP (and associated N-Taxa and ASPT), Whalley revised BWMP, habitat-specific... Read More about biotic: Calculation of Freshwater Biotic Indices. R package version 0.1.2.