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Report of the 2017 Protistology-UK Spring Meeting (2017)
Presentation / Conference Contribution
Rueckert, S., & Tsaousis, A. D. (2017). Report of the 2017 Protistology-UK Spring Meeting. European Journal of Protistology, 61(Pt.A), 307-310. https://doi.org/10.1016/j.ejop.2017.10.003

The Protistology-UK 2017 spring meeting was organised as part of the 2017 Annual Meeting of the Microbiology Society in Edinburgh between the 3rd to the 6th of April 2017. The meeting was held at the Edinburgh International Conference Centre (EICC)... Read More about Report of the 2017 Protistology-UK Spring Meeting.

Hybrid life cycle assessment (LCA) will likely yield more accurate results than process-based LCA (2017)
Journal Article
Pomponi, F., & Lenzen, M. (2017). Hybrid life cycle assessment (LCA) will likely yield more accurate results than process-based LCA. Journal of Cleaner Production, https://doi.org/10.1016/j.jclepro.2017.12.119

We analyse the comparative investigation into truncation vs. aggregation errors of process-based and hybrid LCA by Yang et al. 2017. We analyse the validity of their findings when the hypothetical five-sector economy is altered to account for realist... Read More about Hybrid life cycle assessment (LCA) will likely yield more accurate results than process-based LCA.

Sediment Temperature Impact on Population Structure and Dynamics of the Crab Austruca iranica Pretzmann, 1971 (Crustacea: Ocypodidae) in Subtropical Mangroves of the Persian Gulf (2018)
Journal Article
Saeedi, H., Kamrani, E., Nordhaus, I., & Diele, K. (2018). Sediment Temperature Impact on Population Structure and Dynamics of the Crab Austruca iranica Pretzmann, 1971 (Crustacea: Ocypodidae) in Subtropical Mangroves of the Persian Gulf. Wetlands, https://doi.org/10.1007/s13157-018-0998-5

Ocypodid crabs inhabit intertidal sandy/muddy flats of tropical and sub-tropical mangroves. Iran has three species of the genus Austruca. In contrast to A. sindensis and A. lactea, almost nothing is known about the population dynamics and its driving... Read More about Sediment Temperature Impact on Population Structure and Dynamics of the Crab Austruca iranica Pretzmann, 1971 (Crustacea: Ocypodidae) in Subtropical Mangroves of the Persian Gulf.

A method for deriving time-variable avian re-nesting probability functions for use in seasonal productivity models (2014)
Presentation / Conference Contribution
White, P. (2013, April). A method for deriving time-variable avian re-nesting probability functions for use in seasonal productivity models. Presented at BOU Annual Conference. From populations to policy impact: avian demography in a changing world

The demographic parameters productivity, survival and migration ultimately determine local avian population trends. Their measurement is essential in bird conservation, for diagnosing proximate causes of population declines and for testing responses... Read More about A method for deriving time-variable avian re-nesting probability functions for use in seasonal productivity models.

Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists (2018)
Journal Article
Lentendu, G., Mahé, F., Bass, D., Rueckert, S., Stoeck, T., & Dunthorn, M. (2018). Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists. Molecular Ecology, 27(13), 2846-2857. https://doi.org/10.1111/mec.14731

Tropical animals and plants are known to have high alpha diversity within forests, but low beta diversity between forests. By contrast, it is unknown if microbes inhabiting the same ecosystems exhibit similar biogeographic patterns. To evaluate the b... Read More about Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes (2018)
Journal Article
Adl, S. M., Bass, D., Lane, C. E., Lukeš, J., Schoch, C. L., Smirnov, A., Agatha, S., Berney, C., Brown, M. W., Burki, F., Cárdenas, P., Čepička, I., Chistyakova, L., del Campo, J., Dunthorn, M., Edvardsen, B., Eglit, Y., Guillou, L., Hampl, V., Heiss, A. A., …Zhang, Q. (2019). Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. Journal of Eukaryotic Microbiology, 66(1), 4-119. https://doi.org/10.1111/jeu.12691

This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even... Read More about Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.

Visitor Perceptions of Captive, Endangered Barbary Macaques (Macaca sylvanus) Used as Photo Props in Jemaa El Fna Square, Marrakech, Morocco (2018)
Journal Article
Stazaker, K., & Mackinnon, J. (2018). Visitor Perceptions of Captive, Endangered Barbary Macaques (Macaca sylvanus) Used as Photo Props in Jemaa El Fna Square, Marrakech, Morocco. Anthrozoös, 31(6), 761-776. https://doi.org/10.1080/08927936.2018.1529360

15 Visitors to Jemaa El Fna Square can pay to have their photograph taken with Barbary 16 macaques. Our aim was to characterise visitors' perceptions of such photo props, 17 enabling demand-reducing interventions to be targeted appropriately and dest... Read More about Visitor Perceptions of Captive, Endangered Barbary Macaques (Macaca sylvanus) Used as Photo Props in Jemaa El Fna Square, Marrakech, Morocco.

Morphology and molecular systematic of marine gregarines (Apicomplexa) from Southwestern Atlantic spionid polychaetes (2018)
Journal Article
Rueckert, S., Glasinovich, N., Diez, M., Cremonte, F., & Vázquez, N. (2018). Morphology and molecular systematic of marine gregarines (Apicomplexa) from Southwestern Atlantic spionid polychaetes. Journal of Invertebrate Pathology, 159, 49-60. https://doi.org/10.1016/j.jip.2018.10.010

Gregarines are a common group of parasites that infect the intestines of marine invertebrates, and particularly polychaetes. Here, we describe for the first time four gregarine species that inhabit the intestines of three spionid species: Dipolydora... Read More about Morphology and molecular systematic of marine gregarines (Apicomplexa) from Southwestern Atlantic spionid polychaetes.

Land use driven change in soil pH affects microbial carbon cycling processes (2018)
Journal Article
Malik, A. A., Puissant, J., Buckeridge, K. M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H. S., Peyton, J. M., Mason, K. E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R. F., Ostle, N., Gleixner, G., & Griffiths, R. I. (2018). Land use driven change in soil pH affects microbial carbon cycling processes. Nature Communications, 9(1), Article 3591. https://doi.org/10.1038/s41467-018-05980-1

Soil microorganisms act as gatekeepers for soil–atmosphere carbon exchange by balancing the accumulation and release of soil organic matter. However, poor understanding of the mechanisms responsible hinders the development of effective land managemen... Read More about Land use driven change in soil pH affects microbial carbon cycling processes.

Rubber plantation ageing controls soil biodiversity after land conversion from cassava (2018)
Journal Article
Peerawat, M., Blaud, A., Trap, J., Chevallier, T., Alonso, P., Gay, F., Thaler, P., Spor, A., Sebag, D., Choosai, C., Suvannang, N., Sajjaphan, K., & Brauman, A. (2018). Rubber plantation ageing controls soil biodiversity after land conversion from cassava. Agriculture, ecosystems & environment, 257, 92-102. https://doi.org/10.1016/j.agee.2018.01.034

The rapid expansion of perennial crops is a major threat to biodiversity in Southeast Asia. The biodiversity losses related to the conversion of forest lands to oil palm or rubber plantations (RP) are well documented by recent studies. However, the i... Read More about Rubber plantation ageing controls soil biodiversity after land conversion from cassava.

The abundance of nitrogen cycle genes and potential greenhouse gas fluxes depends on land use type and little on soil aggregate size (2017)
Journal Article
Blaud, A., van der Zaan, B., Menon, M., Lair, G. J., Zhang, D., Huber, P., Schiefer, J., Blum, W. E., Kitzler, B., Wei, E. H., van Gaans, P., & Banwart, S. (2018). The abundance of nitrogen cycle genes and potential greenhouse gas fluxes depends on land use type and little on soil aggregate size. Applied Soil Ecology, 125, 1-11. https://doi.org/10.1016/j.apsoil.2017.11.026

Soil structure is known to influence microbial communities in soil and soil aggregates are the fundamental ecological unit of organisation that support soil functions. However, still little is known about the distribution of microbial communities and... Read More about The abundance of nitrogen cycle genes and potential greenhouse gas fluxes depends on land use type and little on soil aggregate size.

Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition (2016)
Book Chapter
Blaud, A., Menon, M., van der Zaan, B., Lair, G., & Banwart, S. (2017). Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition. In D. Sparks, & S. Banwart (Eds.), Quantifying and Managing Soil Functions in Earth's Critical Zone - Combining Experimentation and Mathematical Modelling (119-142). Academic Press. https://doi.org/10.1016/bs.agron.2016.10.006

Soil aggregates are microhabitats for microorganisms, and directly influence microorganisms that live within and are influenced by microorganisms in return. Two methods are used to isolate soil aggregates by their size: dry sieving (sieving air-dried... Read More about Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition.

Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T-RFLP method (2018)
Journal Article
Munir, M. B., Marsh, T. L., Blaud, A., Hashim, R., Janti Anak Joshua, W., & Mohd Nor, S. A. (2018). Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T-RFLP method. Aquaculture Research, 49(10), 3350-3361. https://doi.org/10.1111/are.13799

This study was designed to evaluate the effects of three prebiotics (β‐glucan, galacto‐oligosaccharide [GOS], mannan‐oligosaccharide [MOS]) and two probiotics (Saccharomyces cerevisiae, Lactobacillus acidophilus) on the microbiome of snakehead during... Read More about Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T-RFLP method.

Analysing the effect of soil organic matter on bacterial communities using T-RFLP fingerprinting: different methods, different stories? (2015)
Journal Article
Blaud, A., Diouf, F., Herrmann, A. M., & Lerch, T. Z. (2015). Analysing the effect of soil organic matter on bacterial communities using T-RFLP fingerprinting: different methods, different stories?. Biology and Fertility of Soils, 51(8), 959-971. https://doi.org/10.1007/s00374-015-1041-0

Soil microbial ecology needs robust tools to elucidate ecological questions, such as the impact of fertilisation on soil microbial communities. However, the methods and data analysis used can directly affect the biological conclusions. In this study,... Read More about Analysing the effect of soil organic matter on bacterial communities using T-RFLP fingerprinting: different methods, different stories?.

Data from: Routes to achieving sustainable intensification in simulated dairy farms - the importance of production efficiency and complimentary land uses (2019)
Data
White, P., Lee, M., Roberts, D., & Cole, L. (2019). Data from: Routes to achieving sustainable intensification in simulated dairy farms - the importance of production efficiency and complimentary land uses. [Data]. https://doi.org/10.17869/enu.2019.1497843

Data underpinning: White, P. J. C., Lee, M. A., Roberts, D. J., & Cole, L. J. (2019). Routes to achieving sustainable intensification in simulated dairy farms: The importance of production efficiency and complimentary land uses. Journal of Applied Ec... Read More about Data from: Routes to achieving sustainable intensification in simulated dairy farms - the importance of production efficiency and complimentary land uses.

Ecological status and sources of anthropogenic contaminants in mangroves of the Wouri River Estuary (Cameroon) (2016)
Journal Article
Fusi, M., Beone, G. M., Suciu, N. A., Sacchi, A., Trevisan, M., Capri, E., Daffonchio, D., Din, N., Dahdouh-Guebas, F., & Cannicci, S. (2016). Ecological status and sources of anthropogenic contaminants in mangroves of the Wouri River Estuary (Cameroon). Marine Pollution Bulletin, 109(2), 723-733. https://doi.org/10.1016/j.marpolbul.2016.06.104

Mangroves are critically threatened by human activities, despite the important ecosystem functions and services they provide. Mangroves in Cameroon represent no exception to the worldwide trend of mangrove destruction, especially around Douala, on th... Read More about Ecological status and sources of anthropogenic contaminants in mangroves of the Wouri River Estuary (Cameroon).

The Lions' Gate: Towards a Permaculture-inspired Blended Space (2019)
Presentation / Conference Contribution
Egan, C., Thompson, R., & O'Dowd, A. (2019). The Lions' Gate: Towards a Permaculture-inspired Blended Space. . https://doi.org/10.1145/3338103.3338110

In light of the devastating ecological effects of climate breakdown and with human well-being under severe stress, this paper presents The Lions' Gate-an in-development, urban, interactive permaculture project on-campus in Edinburgh, Scotland. We arg... Read More about The Lions' Gate: Towards a Permaculture-inspired Blended Space.

Environmental latitudinal gradients and host specificity shape Symbiodiniaceae distribution in Red Sea Porites corals (2019)
Journal Article
Terraneo, T. I., Fusi, M., Hume, B. C., Arrigoni, R., Voolstra, C. R., Benzoni, F., Forsman, Z. H., & Berumen, M. L. (2019). Environmental latitudinal gradients and host specificity shape Symbiodiniaceae distribution in Red Sea Porites corals. Journal of Biogeography, 46(10), 2323-2335. https://doi.org/10.1111/jbi.13672

Aim To assess the diversity of algal symbionts of the family Symbiodiniaceae associated with the coral genus Porites in the Red Sea, and to test for host-specificity and environmental variables driving biogeographical patterns of algal symbiont dist... Read More about Environmental latitudinal gradients and host specificity shape Symbiodiniaceae distribution in Red Sea Porites corals.

The symbiotic spectrum: where do the gregarines fit? (2019)
Journal Article
Rueckert, S., Betts, E. L., & Tsaousis, A. D. (2019). The symbiotic spectrum: where do the gregarines fit?. Trends in Parasitology, 35(9), 687-694. https://doi.org/10.1016/j.pt.2019.06.013

Gregarine apicomplexans are closely related to parasites such as Plasmodium, Toxoplasma, and Cryptosporidium, which are causing severe health and economic burdens. Colonizing only invertebrates and having no obvious medical relevance, they are mostly... Read More about The symbiotic spectrum: where do the gregarines fit?.