Outputs (23)

MaTSE: the gene expression time-series explorer. (2013)
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013). MaTSE: the gene expression time-series explorer. BMC Bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1

Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatment, and prevention of diseases. There are however significant challenges to... Read More about MaTSE: the gene expression time-series explorer..

MaTSE: The microarray time-series explorer (2012)
Presentation / Conference Contribution
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012). MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis) (41-48). https://doi.org/10.1109/biovis.2012.6378591

This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory analysis of large scale microarray timeseries data. The software combines a... Read More about MaTSE: The microarray time-series explorer.

Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. (2010)
Presentation / Conference Contribution
Craig, P., Cannon, A., Kennedy, J., & Kukla, R. (2010, September). Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. Presented at The 7th International Conference on Cooperative Design, Visualisation and Engineering

This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation component called the ‘pattern browser’ which is used to support the annotati... Read More about Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data..

Improving access to transportation documents: the roles of repositories, thesauri, metadata and automated keyword generation. (2008)
Presentation / Conference Contribution
Wigan, M., & Kukla, R. (2008). Improving access to transportation documents: the roles of repositories, thesauri, metadata and automated keyword generation.

A new data, document and geospatial repository: knowledge base and project support for a major international railway project. (2008)
Presentation / Conference Contribution
Wigan, M., Kukla, R., Benjamins, M., & Grashoff, P. (2008, April). A new data, document and geospatial repository: knowledge base and project support for a major international railway project. Poster presented at Third International Conference on Open Repositories

The simplicity of the basic design has proved to be robust to the changing and varied needs of different ?clients?, but the complexity of the intellectual property issues engendered by the mix of commercial, open source and hand rolled software has p... Read More about A new data, document and geospatial repository: knowledge base and project support for a major international railway project..

A knowledge base and project support for a major international railway project. (2007)
Presentation / Conference Contribution
Wigan, M., Kukla, R., Benjamins, M., & Grashoff, P. (2007). A knowledge base and project support for a major international railway project.

A software framework for the microscopic modelling of pedestrian movement (2007)
Thesis
Kukla, R. (2007). A software framework for the microscopic modelling of pedestrian movement. (Thesis). Edinburgh Napier University. Retrieved from http://researchrepository.napier.ac.uk/id/eprint/3927

A town planner, faced with the task of designing attractive walking spaces, needs a tool that will allow different designs to be compared in terms of their attractiveness as well as their effectiveness. PEDFLOW is an attempt to create such a tool. It... Read More about A software framework for the microscopic modelling of pedestrian movement.

RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project. (2007)
Presentation / Conference Contribution
Wigan, M., Kukla, R., Benjamins, M., & Grashoff, P. (2007, October). RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project. Presented at European transport conference 2007

The paper places data and document access, use and exploration systems in the context of the Data Observatories movement, as well as the document repository systems now becoming mandated for universities. It will show how taking these developments in... Read More about RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project..

The ReOrient knowledge base. (2007)
Other
Wigan, M., & Kukla, R. (2007). The ReOrient knowledge base

REORIENT will create a Knowledge Base, which will serve as a repository of information, data and outputs from its analytical work and will support the Commission in formulating the terms of reference for the Integrated Project. The Knowledge Base wil... Read More about The ReOrient knowledge base..

Developing a core ontology for taxonomic data. (2006)
Presentation / Conference Contribution
Kennedy, J., Gales, R., Hyam, R., Kukla, R., Wieczorek, J., Hagedorn, G., …Vieglais, D. (2006). Developing a core ontology for taxonomic data. In L. Belbin, A. Rissoné, & A. Weitzman (Eds.), Proceedings of TDWG (2006), St Louis, MI

Over recent years several sub-groups within the Taxonomic Databases Working Group (TDWG) have developed models and exchange standards to facilitate data sharing within the taxonomic community. These include ABCD, SDD, DwC, TCS and Spatial Data Standa... Read More about Developing a core ontology for taxonomic data..