All Outputs (36)

Design and Evaluation of Visualisation Techniques to Facilitate Argument Exploration (2021)
Journal Article
Khartabil, D., Collins, C., Wells, S., Bach, B., & Kennedy, J. (2021). Design and Evaluation of Visualisation Techniques to Facilitate Argument Exploration. Computer Graphics Forum, 40(6), 447-465. https://doi.org/10.1111/cgf.14389

This paper reports the design and comparison of three visualizations to represent the structure and content within arguments. Arguments are artefacts of reasoning widely used across domains such as education, policy making, and science. An argument i... Read More about Design and Evaluation of Visualisation Techniques to Facilitate Argument Exploration.

Constructing and Evaluating Visualisation Task Classifications: Process and Considerations (2019)
Journal Article
Kerracher, N., & Kennedy, J. (2019). Constructing and Evaluating Visualisation Task Classifications: Process and Considerations. Computer Graphics Forum, 36(3), 47-59. https://doi.org/10.1111/cgf.13167

Categorising tasks is a common pursuit in the visualisation research community, with a wide variety of taxonomies, typologies, design spaces, and frameworks having been developed over the last three decades. While these classifications are universall... Read More about Constructing and Evaluating Visualisation Task Classifications: Process and Considerations.

BayesPiles: Visualisation Support for Bayesian Network Structure Learning (2018)
Journal Article
Vogogias, A., Kennedy, J., Archambault, D., Bach, B., Smith, V. A., & Currant, H. (2018). BayesPiles: Visualisation Support for Bayesian Network Structure Learning. ACM transactions on intelligent systems and technology, 10(1), Article 5. https://doi.org/10.1145/3230623

We address the problem of exploring, combining and comparing large collections of scored, directed networks for understanding inferred Bayesian networks used in biology. In this feld, heuristic algorithms explore the space of possible network solutio... Read More about BayesPiles: Visualisation Support for Bayesian Network Structure Learning.

Pathways for Theoretical Advances in Visualization (2017)
Journal Article
Chen, M., Grinstein, G., Johnson, C. R., Kennedy, J., & Tory, M. (2017). Pathways for Theoretical Advances in Visualization. IEEE Computer Graphics and Applications, 37(4), 103-112. https://doi.org/10.1109/MCG.2017.3271463

There is little doubt that having a theoretic foundation will benefit the field of visualization, including its main subfields: information visualization, scientific visualization and visual analytics, as well as many domain-specific applications suc... Read More about Pathways for Theoretical Advances in Visualization.

A Task Taxonomy for Temporal Graph Visualisation (2015)
Journal Article
Kerracher, N., Kennedy, J., & Chalmers, K. (2015). A Task Taxonomy for Temporal Graph Visualisation. IEEE Transactions on Visualization and Computer Graphics, 21(10), 1160-1172. https://doi.org/10.1109/tvcg.2015.2424889

By extending and instantiating an existing formal task framework, we define a task taxonomy and task design space for temporal graph visualisation. We discuss the process involved in their generation, and describe how the design space can be ‘sliced... Read More about A Task Taxonomy for Temporal Graph Visualisation.

Vesper: Visualising species archives (2014)
Journal Article
Graham, M., & Kennedy, J. (2014). Vesper: Visualising species archives. Ecological Informatics, 24, 132-147. https://doi.org/10.1016/j.ecoinf.2014.08.004

Vesper (Visual Exploration of SPEcies-referenced Repositories) is a tool that visualises Darwin Core Archive (DwC-A) datasets, and is aimed at reducing the amount of time and effort expended by biologists to ascertain the quality of data they are gen... Read More about Vesper: Visualising species archives.

Visualization beyond the desktop--the Next Big Thing. (2014)
Journal Article
Roberts, J. C., Ritsos, P. D., Badam, S. K., Brodbeck, D., Kennedy, J., & Elmqvist, N. (2014). Visualization beyond the desktop--the Next Big Thing. IEEE Computer Graphics and Applications, 34(6), 26-34. https://doi.org/10.1109/MCG.2014.82

Visualization is coming of age. With visual depictions being seamlessly integrated into documents, and data visualization techniques being used to understand increasingly large and complex datasets, the term "visualization"' is becoming used in every... Read More about Visualization beyond the desktop--the Next Big Thing..

Helium: visualization of large scale plant pedigrees (2014)
Journal Article
Shaw, P., Graham, M., Kennedy, J., Milne, I., & Marshall, D. F. (2014). Helium: visualization of large scale plant pedigrees. BMC Bioinformatics, 15, Article 259. https://doi.org/10.1186/1471-2105-15-259

Plant breeders use an increasingly diverse range of data types to identify lines with desirable characteristics suitable to be taken forward in plant breeding programmes. There are a number of key morphological and physiological traits, such as disea... Read More about Helium: visualization of large scale plant pedigrees.

MaTSE: the gene expression time-series explorer. (2013)
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013). MaTSE: the gene expression time-series explorer. BMC Bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1

Background High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatment, and prevention of diseases. There are however significant challenges to... Read More about MaTSE: the gene expression time-series explorer..

A comparison of techniques for name matching (2012)
Journal Article
Peng, T., Li, L., & Kennedy, J. (2012). A comparison of techniques for name matching. GSTF journal on computing, 2,

Information explosion is a problem for everyone nowadays. It is a great challenge to all kinds of businesses to maintain high quality of data in their information applications, such as data integration, text and web mining, information retrieval, sea... Read More about A comparison of techniques for name matching.

VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees (2012)
Journal Article
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2012). VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees. BMC Bioinformatics, 13/8, https://doi.org/10.1186/1471-2105-13-S8-S5

Pedigree genotype datasets are used for analysing genetic inheritance and to map genetic markers and traits. Such datasets consist of hundreds of related animals genotyped for thousands of genetic markers and invariably contain multiple errors in bot... Read More about VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees.

Visualising errors in animal pedigree genotype data (2011)
Journal Article
Graham, M., Kennedy, J., Paterson, T., & Law, A. (2011). Visualising errors in animal pedigree genotype data. Computer Graphics Forum, 30, 1011-1020. https://doi.org/10.1111/j.1467-8659.2011.01950.x

Genetic analysis of a breeding animal population involves determining the inheritance pattern of genotypes for multiple genetic markers across the individuals in the population pedigree structure. However, experimental pedigree genotype data invariab... Read More about Visualising errors in animal pedigree genotype data.

Research directions in data wrangling: Visualizations and transformations for usable and credible data (2011)
Journal Article
Kandel, S., Heer, J., Plaisant, C., Kennedy, J., Ham, F. V., Riche, N. H., …Buono, P. (2011). Research directions in data wrangling: Visualizations and transformations for usable and credible data. Information Visualization, Octobe, 271-288. https://doi.org/10.1177/1473871611415994

In spite of advances in technologies for working with data, analysts still spend an inordinate amount of time diagnosing data quality issues and manipulating data into a usable form. This process of ‘data wrangling’ often constitutes the most tedious... Read More about Research directions in data wrangling: Visualizations and transformations for usable and credible data.

A rule based taxonomy of dirty data. (2011)
Journal Article
Li, L., Peng, T., & Kennedy, J. (2011). A rule based taxonomy of dirty data. GSTF journal on computing, 1(2), 140-148

There is a growing awareness that high quality of data is a key to today’s business success and that dirty data existing within data sources is one of the causes of poor data quality. To ensure high quality data, enterprises need to have a process, m... Read More about A rule based taxonomy of dirty data..

A survey of multiple tree visualisation. (2010)
Journal Article
Graham, M., & Kennedy, J. (2010). A survey of multiple tree visualisation. Information Visualization, 9, 235-252. https://doi.org/10.1057/ivs.2009.29

This paper summarises the state-of-the-art in multiple tree visualisations. It discusses the spectrum of current representation techniques used on single trees, pairs of trees and finally multiple trees, in order to identify which representations are... Read More about A survey of multiple tree visualisation..

The minimum information about a genome sequence (MIGS) specification (2008)
Journal Article
Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., …Wipat, A. (2008). The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26, 541-547. https://doi.org/10.1038/nbt1360

With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international worki... Read More about The minimum information about a genome sequence (MIGS) specification.

Visual Exploration of Alternative Taxonomies through Concepts (2007)
Journal Article
Graham, M., & Kennedy, J. (2007). Visual Exploration of Alternative Taxonomies through Concepts. Ecological Informatics, 2, 248-261. https://doi.org/10.1016/j.ecoinf.2007.07.004

A graphical user interface is presented that allows users of taxonomic data to explore concept relationships between conflicting but related taxonomic classifications. Ecological analyses that use taxonomic metadata depend on accurate naming of spe... Read More about Visual Exploration of Alternative Taxonomies through Concepts.

Exploring multiple trees through DAG representations (2007)
Journal Article
Graham, M., & Kennedy, J. (2007). Exploring multiple trees through DAG representations. IEEE Transactions on Visualization and Computer Graphics, 13, 1294-1301. https://doi.org/10.1109/TVCG.2007.70556

We present a Directed Acyclic Graph visualisation designed to allow interaction with a set of multiple classification trees, specifically to find overlaps and differences between groups of trees and individual trees. The work is motivated by the need... Read More about Exploring multiple trees through DAG representations.

A standard data model representation for taxonomic information. (2006)
Journal Article
Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006). A standard data model representation for taxonomic information. OMICS, 10, 220-230. https://doi.org/10.1089/omi.2006.10.220

The names used by biologists to label the observations they make are imprecise. This is an issue as workers increasingly seek to exploit data gathered from multiple, unrelated sources on line. Even when the international codes of nomenclature are fol... Read More about A standard data model representation for taxonomic information..

Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data (2005)
Journal Article
Craig, P., Kennedy, J., & Cumming, A. (2005). Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data. BMC Bioinformatics, 6(Suppl 3), P8. https://doi.org/10.1186/1471-2105-6-S3-P8

Microarray technologies are a relatively new development that allow biologists to monitor the activity of thousands of genes (normally around 8,000) in parallel across multiple stages of a biological process. While this new perspective on biological... Read More about Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data.