Outputs (11)

MaTSE: the gene expression time-series explorer (2013)
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013). MaTSE: the gene expression time-series explorer. BMC Bioinformatics, 14(Suppl 19), https://doi.org/10.1186/1471-2105-14-s19-s1

Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatment, and prevention of diseases. There are however significant challenges to... Read More about MaTSE: the gene expression time-series explorer.

MaTSE: The microarray time-series explorer (2012)
Presentation / Conference Contribution
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012, October). MaTSE: The microarray time-series explorer. Presented at 2012 IEEE Symposium on Biological Data Visualization (BioVis)

This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory analysis of large scale microarray timeseries data. The software combines a... Read More about MaTSE: The microarray time-series explorer.

Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. (2010)
Presentation / Conference Contribution
Craig, P., Cannon, A., Kennedy, J., & Kukla, R. (2010, September). Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. Presented at The 7th International Conference on Cooperative Design, Visualisation and Engineering

This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation component called the ‘pattern browser’ which is used to support the annotati... Read More about Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data..

RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project. (2007)
Presentation / Conference Contribution
Wigan, M., Kukla, R., Benjamins, M., & Grashoff, P. (2007, October). RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project. Presented at European transport conference 2007

The paper places data and document access, use and exploration systems in the context of the Data Observatories movement, as well as the document repository systems now becoming mandated for universities. It will show how taking these developments in... Read More about RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project..

Developing a core ontology for taxonomic data. (2006)
Presentation / Conference Contribution
Kennedy, J., Gales, R., Hyam, R., Kukla, R., Wieczorek, J., Hagedorn, G., Döring, M., & Vieglais, D. (2006, October). Developing a core ontology for taxonomic data. Presented at Taxonomy Data Working Group (TDWG) 2006

Over recent years several sub-groups within the Taxonomic Databases Working Group (TDWG) have developed models and exchange standards to facilitate data sharing within the taxonomic community. These include ABCD, SDD, DwC, TCS and Spatial Data Standa... Read More about Developing a core ontology for taxonomic data..

Converting an existing taxonomic data resource to employ an ontology and LSIDs. (2006)
Presentation / Conference Contribution
Kennedy, J., Gales, R., & Kukla, R. (2006, October). Converting an existing taxonomic data resource to employ an ontology and LSIDs. Presented at Taxonomic Data Working Group (TDWG) 2006

Data sharing is fundamental to biodiversity and taxonomic data applications, however previous attempts at developing mechanisms to facilitate sharing within the community have had limited effect. Reasons for this include the lack of take up of data e... Read More about Converting an existing taxonomic data resource to employ an ontology and LSIDs..

Standard Data Model Representation for Taxonomic Information (2006)
Journal Article
Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006). Standard Data Model Representation for Taxonomic Information. OMICS, 10(2), 220-230. https://doi.org/10.1089/omi.2006.10.220

The names used by biologists to label the observations they make are imprecise. This is an issue as workers increasingly seek to exploit data gathered from multiple, unrelated sources on line. Even when the international codes of nomenclature are fol... Read More about Standard Data Model Representation for Taxonomic Information.

Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration (2005)
Presentation / Conference Contribution
Kennedy, J., Kukla, R., & Paterson, T. (2005, July). Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration. Presented at Second International Workshop, DILS 2005, San Diego, CA, USA

Biologists use scientific names to label the organisms described in
their data; however, these names are not unique identifiers for taxonomic entities.
Alternative taxonomic classifications may apply the same name, associated
with alternative defi... Read More about Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration.

A comparison of video and infrared based tracking of pedestrian movements. (2005)
Presentation / Conference Contribution
Kerridge, J., Kukla, R., Willis, A., Armitage, A., Binnie, D., & Lei, L. (2003, October). A comparison of video and infrared based tracking of pedestrian movements. Presented at Traffic and Granular Flow '03

We provide a comparison of the relative merits of video and infrared based methods for collecting pedestrian movements from the real world and also from experimental environments. We describe the underlying technological basis of both methods and the... Read More about A comparison of video and infrared based tracking of pedestrian movements..

Human movement behaviour in urban spaces: Implications for the design and modelling of effective pedestrian environments. (2004)
Journal Article
Willis, A., Gjersoe, N., Havard, C., Kerridge, J., & Kukla, R. (2004). Human movement behaviour in urban spaces: Implications for the design and modelling of effective pedestrian environments. Environment and planning. B, Planning & design, 31(6), 805-828. https://doi.org/10.1068/b3060

Despite a burgeoning research effort directed at the design and modelling of effective urban spaces for pedestrians, remarkably little is known about how pedestrians actually negotiate urban spaces. This paper reports the results of a video-based obs... Read More about Human movement behaviour in urban spaces: Implications for the design and modelling of effective pedestrian environments..

PEDFLOW: development of an autonomous agent model of pedestrian flow. (2001)
Journal Article
Kukla, R., Kerridge, J., Willis, A., & Hine, J. (2001). PEDFLOW: development of an autonomous agent model of pedestrian flow. Transportation research record, 1774, 11-17. https://doi.org/10.3141/1774-02

The paper discusses the need for an autonomous agent approach for the modeling of pedestrians in urban
environments and places PEDFLOW in the context of existing models. PEDFLOW is a microscopic model
of pedestrians’ movement, where each pedestrian... Read More about PEDFLOW: development of an autonomous agent model of pedestrian flow..